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Revision 1.13 - (view) (download) - [select for diffs]
Tue Jul 1 19:44:24 2008 UTC (3 months ago) by mcschatz
Branch: MAIN
CVS Tags: HEAD
Changes since 1.12: +8 -0 lines
Diff to previous 1.12

Add simple tool for overlapping a pair of sequences

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Revision 1.12 - (view) (download) - [select for diffs]
Sun Jun 22 15:49:40 2008 UTC (3 months, 2 weeks ago) by aphillippy
Branch: MAIN
Changes since 1.11: +12 -7 lines
Diff to previous 1.11

build compatability fixes

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Revision 1.11 - (view) (download) - [select for diffs]
Wed Oct 10 17:29:22 2007 UTC (11 months, 3 weeks ago) by mcschatz
Branch: MAIN
Changes since 1.10: +10 -1 lines
Diff to previous 1.10

Add tool for fast computation of deBrujin graph

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Revision 1.10 - (view) (download) - [select for diffs]
Wed Apr 4 19:16:17 2007 UTC (18 months ago) by mcschatz
Branch: MAIN
Changes since 1.9: +10 -1 lines
Diff to previous 1.9

Add simple tool for verifying layouts

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Revision 1.9 - (view) (download) - [select for diffs]
Fri Jan 26 22:10:25 2007 UTC (20 months, 1 week ago) by mcschatz
Branch: MAIN
Changes since 1.8: +9 -0 lines
Diff to previous 1.8

First version of code to compute deBrujin Graph

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Revision 1.8 - (view) (download) - [select for diffs]
Fri Jun 23 18:46:47 2006 UTC (2 years, 3 months ago) by mcschatz
Branch: MAIN
CVS Tags: AMOS_2_0_0, AMOS_2_0_1
Changes since 1.7: +6 -2 lines
Diff to previous 1.7

Read directly from banks, options on kmer length, min count to report

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Revision 1.7 - (view) (download) - [select for diffs]
Thu Jun 22 03:42:12 2006 UTC (2 years, 3 months ago) by mcschatz
Branch: MAIN
Changes since 1.6: +7 -0 lines
Diff to previous 1.6

Simple tool to count kmers

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Revision 1.6 - (view) (download) - [select for diffs]
Tue Apr 4 23:56:11 2006 UTC (2 years, 6 months ago) by mcschatz
Branch: MAIN
Changes since 1.5: +1 -0 lines
Diff to previous 1.5

Add align_poly.hh

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Revision 1.5 - (view) (download) - [select for diffs]
Wed Mar 29 22:54:53 2006 UTC (2 years, 6 months ago) by mpop
Branch: MAIN
Changes since 1.4: +16 -1 lines
Diff to previous 1.4

Added code to handle polymorphisms in the reads
Added utility to dump contigs into RED records in a .afg file

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Revision 1.4 - (view) (download) - [select for diffs]
Tue Dec 13 15:49:11 2005 UTC (2 years, 9 months ago) by mschatz
Branch: MAIN
Changes since 1.3: +8 -0 lines
Diff to previous 1.3

Add partial order multiple sequence aligner

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Revision 1.3 - (view) (download) - [select for diffs]
Fri Jul 22 15:21:02 2005 UTC (3 years, 2 months ago) by adelcher
Branch: MAIN
CVS Tags: v1_4_0b
Changes since 1.2: +3 -0 lines
Diff to previous 1.2

Fix problem with uid's being too long.  Now use a hash map
to map uids to subscripts in vector of Reads.

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Revision 1.2 - (view) (download) - [select for diffs]
Fri May 6 04:44:10 2005 UTC (3 years, 5 months ago) by mschatz
Branch: MAIN
CVS Tags: v1_3_0, v1_3_1
Changes since 1.1: +9 -1 lines
Diff to previous 1.1

Add tool to plot kmer coverage

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Revision 1.1 - (view) (download) - [select for diffs]
Wed Aug 11 22:24:12 2004 UTC (4 years, 1 month ago) by aphillip
Branch: MAIN
CVS Tags: v1_2_3, v1_2_4, v1_2_5, v1_2_7, v1_2_8, v1_2_9

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