Log of /AMOS/src/Bank/Makefile.am
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Revision 1.39 - (view) (download) - [select for diffs]
Sun Jun 22 15:49:40 2008 UTC (3 months, 2 weeks ago) by aphillippy
Branch: MAIN
CVS Tags: HEAD
Changes since 1.38: +15 -13 lines
Diff to previous 1.38
build compatability fixes
Revision 1.38 - (view) (download) - [select for diffs]
Tue Jun 5 18:57:29 2007 UTC (16 months ago) by mcschatz
Branch: MAIN
Changes since 1.37: +2 -1 lines
Diff to previous 1.37
Add ConfigFile loading for Assembly Archive conversion
Revision 1.37 - (view) (download) - [select for diffs]
Thu Jan 18 21:03:22 2007 UTC (20 months, 2 weeks ago) by mcschatz
Branch: MAIN
Changes since 1.36: +1 -0 lines
Diff to previous 1.36
Update so dumpFeatures can use AMOS Foundation
Revision 1.36 - (view) (download) - [select for diffs]
Tue Apr 4 23:49:07 2006 UTC (2 years, 6 months ago) by mcschatz
Branch: MAIN
CVS Tags: AMOS_2_0_0, AMOS_2_0_1
Changes since 1.35: +9 -0 lines
Diff to previous 1.35
Add listGCContent
Revision 1.35 - (view) (download) - [select for diffs]
Thu Mar 30 02:01:22 2006 UTC (2 years, 6 months ago) by mcschatz
Branch: MAIN
Changes since 1.34: +8 -0 lines
Diff to previous 1.34
Add simple contig loader
Revision 1.34 - (view) (download) - [select for diffs]
Wed Mar 29 22:54:53 2006 UTC (2 years, 6 months ago) by mpop
Branch: MAIN
Changes since 1.33: +14 -1 lines
Diff to previous 1.33
Added code to handle polymorphisms in the reads Added utility to dump contigs into RED records in a .afg file
Revision 1.33 - (view) (download) - [select for diffs]
Wed Mar 15 23:23:49 2006 UTC (2 years, 6 months ago) by mcschatz
Branch: MAIN
Changes since 1.32: +4 -1 lines
Diff to previous 1.32
support ungapped features, iid
Revision 1.32 - (view) (download) - [select for diffs]
Wed Mar 15 04:17:51 2006 UTC (2 years, 6 months ago) by mcschatz
Branch: MAIN
Changes since 1.31: +21 -13 lines
Diff to previous 1.31
Add tool for reseting libraries on fragments
Revision 1.31 - (view) (download) - [select for diffs]
Thu Mar 2 01:04:18 2006 UTC (2 years, 7 months ago) by mcschatz
Branch: MAIN
Changes since 1.30: +8 -0 lines
Diff to previous 1.30
Add tool to flip entire scaffold, and all of the contigs
Revision 1.30 - (view) (download) - [select for diffs]
Thu Feb 23 04:12:01 2006 UTC (2 years, 7 months ago) by mcschatz
Branch: MAIN
Changes since 1.29: +8 -0 lines
Diff to previous 1.29
Add tool to force contigs in scaffolds into forward direction
Revision 1.29 - (view) (download) - [select for diffs]
Tue Feb 21 22:31:05 2006 UTC (2 years, 7 months ago) by mcschatz
Branch: MAIN
Changes since 1.28: +8 -0 lines
Diff to previous 1.28
New tool to dump scaffold information or multi-fasta of sequences
Revision 1.28 - (view) (download) - [select for diffs]
Thu Feb 2 17:46:37 2006 UTC (2 years, 8 months ago) by mcschatz
Branch: MAIN
Changes since 1.27: +1 -14 lines
Diff to previous 1.27
Move find-duplicate-reads to Validation
Revision 1.27 - (view) (download) - [select for diffs]
Thu Feb 2 00:22:59 2006 UTC (2 years, 8 months ago) by mcschatz
Branch: MAIN
Changes since 1.26: +14 -1 lines
Diff to previous 1.26
Add find-duplicate-reads
Revision 1.26 - (view) (download) - [select for diffs]
Thu Jan 19 22:10:30 2006 UTC (2 years, 8 months ago) by mcschatz
Branch: MAIN
Changes since 1.25: +14 -1 lines
Diff to previous 1.25
Add tool to remove redundant libraries
Revision 1.25 - (view) (download) - [select for diffs]
Tue Nov 8 23:13:53 2005 UTC (2 years, 10 months ago) by mschatz
Branch: MAIN
Changes since 1.24: +9 -1 lines
Diff to previous 1.24
Add renameReads
Revision 1.24 - (view) (download) - [select for diffs]
Thu Oct 13 14:27:39 2005 UTC (2 years, 11 months ago) by mschatz
Branch: MAIN
Changes since 1.23: +14 -6 lines
Diff to previous 1.23
Add tool for listing which contigs a read is placed in (if any)
Revision 1.23 - (view) (download) - [select for diffs]
Wed Oct 12 21:50:05 2005 UTC (2 years, 11 months ago) by mschatz
Branch: MAIN
Changes since 1.22: +8 -0 lines
Diff to previous 1.22
Slightly update helptext
Revision 1.22 - (view) (download) - [select for diffs]
Tue Sep 13 21:39:28 2005 UTC (3 years ago) by mschatz
Branch: MAIN
CVS Tags: v1_4_0b
Changes since 1.21: +8 -0 lines
Diff to previous 1.21
Add tool for combining banks while preserving iids mapping
Revision 1.21 - (view) (download) - [select for diffs]
Fri May 20 18:59:35 2005 UTC (3 years, 4 months ago) by mschatz
Branch: MAIN
CVS Tags: v1_3_0, v1_3_1
Changes since 1.20: +9 -1 lines
Diff to previous 1.20
Add small tutorial program for encoding multiple alignments into messages
Revision 1.20 - (view) (download) - [select for diffs]
Wed May 11 00:43:36 2005 UTC (3 years, 4 months ago) by aphillip
Branch: MAIN
Changes since 1.19: +6 -1 lines
Diff to previous 1.19
needs to link to libGNU
Revision 1.19 - (view) (download) - [select for diffs]
Wed May 11 00:34:21 2005 UTC (3 years, 4 months ago) by mschatz
Branch: MAIN
Changes since 1.18: +18 -1 lines
Diff to previous 1.18
Updates for standalone feature object
Revision 1.18 - (view) (download) - [select for diffs]
Thu May 5 19:33:18 2005 UTC (3 years, 5 months ago) by aphillip
Branch: MAIN
Changes since 1.17: +6 -6 lines
Diff to previous 1.17
fixed for new matepair style
Revision 1.17 - (view) (download) - [select for diffs]
Mon May 2 20:42:25 2005 UTC (3 years, 5 months ago) by aphillip
Branch: MAIN
Changes since 1.16: +1 -17 lines
Diff to previous 1.16
unneeded
Revision 1.16 - (view) (download) - [select for diffs]
Mon May 2 20:13:42 2005 UTC (3 years, 5 months ago) by aphillip
Branch: MAIN
Changes since 1.15: +14 -23 lines
Diff to previous 1.15
switched matepair/fragment usage and index
Revision 1.15 - (view) (download) - [select for diffs]
Sat Apr 30 01:55:07 2005 UTC (3 years, 5 months ago) by mschatz
Branch: MAIN
Changes since 1.14: +10 -1 lines
Diff to previous 1.14
Add updateClrRanges
Revision 1.14 - (view) (download) - [select for diffs]
Tue Apr 26 20:37:41 2005 UTC (3 years, 5 months ago) by aphillip
Branch: MAIN
Changes since 1.13: +8 -0 lines
Diff to previous 1.13
v1 of bank-index
Revision 1.13 - (view) (download) - [select for diffs]
Wed Apr 20 15:23:15 2005 UTC (3 years, 5 months ago) by aphillip
Branch: MAIN
Changes since 1.12: +12 -12 lines
Diff to previous 1.12
added generic feature type, removed old class specific features
Revision 1.12 - (view) (download) - [select for diffs]
Tue Apr 12 19:37:44 2005 UTC (3 years, 5 months ago) by mpop
Branch: MAIN
Changes since 1.11: +10 -3 lines
Diff to previous 1.11
Added bank2fasta
Revision 1.11 - (view) (download) - [select for diffs]
Tue Apr 12 04:02:22 2005 UTC (3 years, 5 months ago) by mschatz
Branch: MAIN
Changes since 1.10: +9 -1 lines
Diff to previous 1.10
New tool to find reads in a contig that are missing based on mates, *Not* working yet
Revision 1.10 - (view) (download) - [select for diffs]
Mon Apr 4 18:51:59 2005 UTC (3 years, 6 months ago) by mschatz
Branch: MAIN
Changes since 1.9: +9 -1 lines
Diff to previous 1.9
Update feature handling
Revision 1.9 - (view) (download) - [select for diffs]
Tue Mar 29 23:42:38 2005 UTC (3 years, 6 months ago) by mschatz
Branch: MAIN
Changes since 1.8: +9 -1 lines
Diff to previous 1.8
SNP Feature loading
Revision 1.8 - (view) (download) - [select for diffs]
Mon Mar 14 18:47:18 2005 UTC (3 years, 6 months ago) by mschatz
Branch: MAIN
Changes since 1.7: +7 -0 lines
Diff to previous 1.7
Add select-reads
Revision 1.7 - (view) (download) - [select for diffs]
Thu Jan 13 18:39:31 2005 UTC (3 years, 8 months ago) by aphillip
Branch: MAIN
CVS Tags: v1_2_8, v1_2_9
Changes since 1.6: +6 -3 lines
Diff to previous 1.6
added tool for unlocking banks
Revision 1.6 - (view) (download) - [select for diffs]
Tue Jan 11 00:01:18 2005 UTC (3 years, 8 months ago) by aphillip
Branch: MAIN
Changes since 1.5: +7 -0 lines
Diff to previous 1.5
added bank-clean utility
Revision 1.5 - (view) (download) - [select for diffs]
Fri Nov 12 23:23:10 2004 UTC (3 years, 10 months ago) by aphillip
Branch: MAIN
CVS Tags: v1_2_7
Changes since 1.4: +1 -0 lines
Diff to previous 1.4
rewrite
Revision 1.4 - (view) (download) - [select for diffs]
Tue Nov 2 16:55:39 2004 UTC (3 years, 11 months ago) by mschatz
Branch: MAIN
Changes since 1.3: +17 -1 lines
Diff to previous 1.3
Adding tool to add base call positions to a bank, and another to extract select contig ids
Revision 1.3 - (view) (download) - [select for diffs]
Thu Sep 30 20:52:29 2004 UTC (4 years ago) by mschatz
Branch: MAIN
Changes since 1.2: +11 -1 lines
Diff to previous 1.2
Adding bank2coverage
Revision 1.2 - (view) (download) - [select for diffs]
Thu Sep 16 14:27:20 2004 UTC (4 years ago) by mschatz
Branch: MAIN
Changes since 1.1: +11 -2 lines
Diff to previous 1.1
Adding tool to convert a bank to a TA contig file
Revision 1.1 - (view) (download) - [select for diffs]
Wed Aug 11 22:26:15 2004 UTC (4 years, 1 month ago) by aphillip
Branch: MAIN
CVS Tags: v1_2_3, v1_2_4, v1_2_5
migration
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