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Revision 1.25 - (view) (download) - [select for diffs]
Sun Jun 22 15:49:41 2008 UTC (3 months, 2 weeks ago) by aphillippy
Branch: MAIN
CVS Tags: HEAD
Changes since 1.24: +7 -7 lines
Diff to previous 1.24

build compatability fixes

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Revision 1.24 - (view) (download) - [select for diffs]
Fri Oct 12 19:46:07 2007 UTC (11 months, 3 weeks ago) by mcschatz
Branch: MAIN
Changes since 1.23: +12 -1 lines
Diff to previous 1.23

Add read-cov-plot

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Revision 1.23 - (view) (download) - [select for diffs]
Wed Sep 26 19:54:00 2007 UTC (12 months, 1 week ago) by mpop
Branch: MAIN
Changes since 1.22: +11 -1 lines
Diff to previous 1.22

Added scaffoldRange2Ungapped to Makefile

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Revision 1.22 - (view) (download) - [select for diffs]
Tue Jun 12 17:36:22 2007 UTC (15 months, 3 weeks ago) by mcschatz
Branch: MAIN
Changes since 1.21: +10 -0 lines
Diff to previous 1.21

Add astats to Makefile

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Revision 1.21 - (view) (download) - [select for diffs]
Fri Oct 27 03:24:12 2006 UTC (23 months, 1 week ago) by mcschatz
Branch: MAIN
CVS Tags: AMOS_2_0_0, AMOS_2_0_1
Changes since 1.20: +5 -5 lines
Diff to previous 1.20

replace bankViewer/libDataStore.a with Contig/libDataStore.a

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Revision 1.20 - (view) (download) - [select for diffs]
Thu Oct 26 22:03:34 2006 UTC (23 months, 1 week ago) by mcschatz
Branch: MAIN
Changes since 1.19: +51 -3 lines
Diff to previous 1.19

Move files out of bankViewer directory

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Revision 1.19 - (view) (download) - [select for diffs]
Fri May 12 20:49:48 2006 UTC (2 years, 4 months ago) by mcschatz
Branch: MAIN
Changes since 1.18: +8 -9 lines
Diff to previous 1.18

Simplify QC plot generation

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Revision 1.18 - (view) (download) - [select for diffs]
Fri Apr 21 20:19:16 2006 UTC (2 years, 5 months ago) by mpop
Branch: MAIN
Changes since 1.17: +8 -8 lines
Diff to previous 1.17

Added cvgStat - tool to explore coverage across contigs, scaffolds, and layouts.

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Revision 1.17 - (view) (download) - [select for diffs]
Thu Apr 6 19:03:05 2006 UTC (2 years, 6 months ago) by mcschatz
Branch: MAIN
Changes since 1.16: +1 -0 lines
Diff to previous 1.16

Add amosvalidate

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Revision 1.16 - (view) (download) - [select for diffs]
Mon Feb 6 18:24:18 2006 UTC (2 years, 7 months ago) by mcschatz
Branch: MAIN
Changes since 1.15: +2 -1 lines
Diff to previous 1.15

Add find-query-breaks.pl

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Revision 1.15 - (view) (download) - [select for diffs]
Thu Feb 2 17:46:39 2006 UTC (2 years, 8 months ago) by mcschatz
Branch: MAIN
Changes since 1.14: +17 -1 lines
Diff to previous 1.14

Move find-duplicate-reads to Validation

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Revision 1.14 - (view) (download) - [select for diffs]
Thu Feb 2 04:31:35 2006 UTC (2 years, 8 months ago) by mcschatz
Branch: MAIN
Changes since 1.13: +12 -1 lines
Diff to previous 1.13

Add tool for finding high read coverage regions

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Revision 1.13 - (view) (download) - [select for diffs]
Wed Jan 18 16:15:20 2006 UTC (2 years, 8 months ago) by mcschatz
Branch: MAIN
Changes since 1.12: +1 -12 lines
Diff to previous 1.12

Create separate persistant assembly directory

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Revision 1.12 - (view) (download) - [select for diffs]
Fri Jan 13 20:49:02 2006 UTC (2 years, 8 months ago) by mcschatz
Branch: MAIN
Changes since 1.11: +14 -2 lines
Diff to previous 1.11

Simpliest barcode graph

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Revision 1.11 - (view) (download) - [select for diffs]
Wed May 11 00:54:51 2005 UTC (3 years, 4 months ago) by aphillip
Branch: MAIN
CVS Tags: v1_3_0, v1_3_1, v1_4_0b
Changes since 1.10: +1 -1 lines
Diff to previous 1.10

typo

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Revision 1.10 - (view) (download) - [select for diffs]
Wed May 11 00:46:50 2005 UTC (3 years, 4 months ago) by aphillip
Branch: MAIN
Changes since 1.9: +7 -7 lines
Diff to previous 1.9

removing from dist until made compatible

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Revision 1.9 - (view) (download) - [select for diffs]
Wed May 11 00:33:30 2005 UTC (3 years, 4 months ago) by mschatz
Branch: MAIN
Changes since 1.8: +6 -1 lines
Diff to previous 1.8

Update cavalidate script for new features, make into real pipeline

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Revision 1.8 - (view) (download) - [select for diffs]
Mon May 2 20:16:59 2005 UTC (3 years, 5 months ago) by mpop
Branch: MAIN
Changes since 1.7: +11 -2 lines
Diff to previous 1.7

Fixed Makefile.am

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Revision 1.7 - (view) (download) - [select for diffs]
Mon May 2 20:14:08 2005 UTC (3 years, 5 months ago) by aphillip
Branch: MAIN
Changes since 1.6: +2 -2 lines
Diff to previous 1.6

needs to be updated for new matepair style

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Revision 1.6 - (view) (download) - [select for diffs]
Wed Apr 20 15:23:15 2005 UTC (3 years, 5 months ago) by aphillip
Branch: MAIN
Changes since 1.5: +4 -4 lines
Diff to previous 1.5

added generic feature type, removed old class specific features

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Revision 1.5 - (view) (download) - [select for diffs]
Fri Apr 8 18:15:12 2005 UTC (3 years, 5 months ago) by mpop
Branch: MAIN
Changes since 1.4: +1 -1 lines
Diff to previous 1.4

Fixed typo in makefile

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Revision 1.4 - (view) (download) - [select for diffs]
Thu Apr 7 19:18:42 2005 UTC (3 years, 6 months ago) by mpop
Branch: MAIN
Changes since 1.3: +12 -2 lines
Diff to previous 1.3

Added shotgunSim to AMOS.

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Revision 1.3 - (view) (download) - [select for diffs]
Tue Mar 29 23:48:13 2005 UTC (3 years, 6 months ago) by mschatz
Branch: MAIN
Changes since 1.2: +1 -1 lines
Diff to previous 1.2

SNP tools

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Revision 1.2 - (view) (download) - [select for diffs]
Thu Mar 24 20:56:59 2005 UTC (3 years, 6 months ago) by mpop
Branch: MAIN
Changes since 1.1: +18 -3 lines
Diff to previous 1.1

Added asmQC

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Revision 1.1 - (view) (download) - [select for diffs]
Wed Aug 11 22:59:43 2004 UTC (4 years, 1 month ago) by aphillip
Branch: MAIN
CVS Tags: v1_2_3, v1_2_4, v1_2_5, v1_2_7, v1_2_8, v1_2_9

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